This page displays metrics for the following dataset:
Name BMMC Multiome p10
Description Human bone marrow mononuclear cells
Type RNA + ATAC
Cells 6,924
Batches 12 donors from 4 sites
Labels 22

1 Batch effect removal

cobolt

Batch ASW batch

Batch ASW site

Graph connectivity

Graph connectivity level 1

Graph iLISI

DCCA

Batch ASW batch

Batch ASW site

Graph connectivity

Graph connectivity level 1

Graph iLISI

MOFA+

Batch ASW batch

Batch ASW site

Graph connectivity

Graph connectivity level 1

Graph iLISI

Multigrate

Batch ASW batch

Batch ASW site

Graph connectivity

Graph connectivity level 1

Graph iLISI

MultiVI

Batch ASW batch

Batch ASW site

Graph connectivity

Graph connectivity level 1

Graph iLISI

scAI

Batch ASW batch

Batch ASW site

Graph connectivity

Graph connectivity level 1

Graph iLISI

scDEC

Batch ASW batch

Batch ASW site

Graph connectivity

Graph connectivity level 1

Graph iLISI

scMDC

Batch ASW batch

Batch ASW site

Graph connectivity

Graph connectivity level 1

Graph iLISI

scMVAE

Batch ASW batch

Batch ASW site

Graph connectivity

Graph connectivity level 1

Graph iLISI

scMVP

Batch ASW batch

Batch ASW site

Graph connectivity

Graph connectivity level 1

Graph iLISI

Seurat v4 WNN

Graph connectivity

Graph connectivity level 1

Graph iLISI

uniPort

Batch ASW batch

Batch ASW site

Graph connectivity

Graph connectivity level 1

Graph iLISI

2 Biological conservation

cobolt

ARI

ARI level 1

AMI

AMI level 1

Graph cLISI

Graph cLISI level 1

Isolated labels ASW

Isolated labels ASW level 1

DCCA

ARI

ARI level 1

AMI

AMI level 1

Graph cLISI

Graph cLISI level 1

Isolated labels ASW

Isolated labels ASW level 1

MOFA+

ARI

ARI level 1

AMI

AMI level 1

Graph cLISI

Graph cLISI level 1

Isolated labels ASW

Isolated labels ASW level 1

Multigrate

ARI

ARI level 1

AMI

AMI level 1

Graph cLISI

Graph cLISI level 1

Isolated labels ASW

Isolated labels ASW level 1

MultiVI

ARI

ARI level 1

AMI

AMI level 1

Graph cLISI

Graph cLISI level 1

Isolated labels ASW

Isolated labels ASW level 1

scAI

ARI

ARI level 1

AMI

AMI level 1

Graph cLISI

Graph cLISI level 1

Isolated labels ASW

Isolated labels ASW level 1

scDEC

ARI

ARI level 1

AMI

AMI level 1

Graph cLISI

Graph cLISI level 1

Isolated labels ASW

Isolated labels ASW level 1

scMDC

ARI

ARI level 1

AMI

AMI level 1

Graph cLISI

Graph cLISI level 1

Isolated labels ASW

Isolated labels ASW level 1

scMVAE

ARI

ARI level 1

AMI

AMI level 1

Graph cLISI

Graph cLISI level 1

Isolated labels ASW

Isolated labels ASW level 1

scMVP

ARI

ARI level 1

AMI

AMI level 1

Graph cLISI

Graph cLISI level 1

Isolated labels ASW

Isolated labels ASW level 1

Seurat v4 WNN

ARI

ARI level 1

AMI

AMI level 1

Graph cLISI

Graph cLISI level 1

uniPort

ARI

ARI level 1

AMI

AMI level 1

Graph cLISI

Graph cLISI level 1

Isolated labels ASW

Isolated labels ASW level 1